14-52553515-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001099652.2(GPR137C):c.368C>T(p.Pro123Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000435 in 1,609,398 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001099652.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
GPR137C | ENST00000321662.11 | c.368C>T | p.Pro123Leu | missense_variant | Exon 1 of 7 | 1 | NM_001099652.2 | ENSP00000315106.6 | ||
GPR137C | ENST00000542169.6 | c.227C>T | p.Pro76Leu | missense_variant | Exon 1 of 8 | 1 | ENSP00000439165.2 | |||
GPR137C | ENST00000555622.1 | c.95C>T | p.Pro32Leu | missense_variant | Exon 1 of 5 | 3 | ENSP00000452563.1 |
Frequencies
GnomAD3 genomes AF: 0.0000263 AC: 4AN: 152222Hom.: 0 Cov.: 32
GnomAD4 exome AF: 0.00000206 AC: 3AN: 1457176Hom.: 0 Cov.: 34 AF XY: 0.00000138 AC XY: 1AN XY: 725110
GnomAD4 genome AF: 0.0000263 AC: 4AN: 152222Hom.: 0 Cov.: 32 AF XY: 0.0000134 AC XY: 1AN XY: 74374
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.368C>T (p.P123L) alteration is located in exon 1 (coding exon 1) of the GPR137C gene. This alteration results from a C to T substitution at nucleotide position 368, causing the proline (P) at amino acid position 123 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at