14-73593804-C-A
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6_ModerateBA1
The NM_152331.4(ACOT4):c.560C>A(p.Ala187Asp) variant causes a missense change. The variant allele was found at a frequency of 0.186 in 1,607,944 control chromosomes in the GnomAD database, including 32,016 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★). Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_152331.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ACOT4 | ENST00000326303.5 | c.560C>A | p.Ala187Asp | missense_variant | Exon 2 of 3 | 1 | NM_152331.4 | ENSP00000323071.4 | ||
ENSG00000258603 | ENST00000664243.1 | n.63-35832G>T | intron_variant | Intron 1 of 1 | ||||||
ENSG00000288797 | ENST00000686335.1 | n.279-1245C>A | intron_variant | Intron 1 of 1 |
Frequencies
GnomAD3 genomes AF: 0.147 AC: 22370AN: 152052Hom.: 2209 Cov.: 32
GnomAD3 exomes AF: 0.0495 AC: 10293AN: 207986Hom.: 1840 AF XY: 0.0491 AC XY: 5490AN XY: 111854
GnomAD4 exome AF: 0.190 AC: 277149AN: 1455774Hom.: 29806 Cov.: 32 AF XY: 0.186 AC XY: 134915AN XY: 723760
GnomAD4 genome AF: 0.147 AC: 22371AN: 152170Hom.: 2210 Cov.: 32 AF XY: 0.145 AC XY: 10827AN XY: 74416
ClinVar
Submissions by phenotype
not provided Benign:1
Benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Aug 30, 2024 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at