16-10183567-GACACACACACACACACAC-GACACACACACACACAC

Position:

• chr16-10183567-GACACACACACACACACAC-GACACACACACACACAC

Variant summary

Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BS2

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.0044 (4 hom., cov: 0)
• Consequence: intergenic_region
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: 1.32

Genes affected

(HGNC:):

ACMG classification

Verdict is Likely_benign. Variant got -4 ACMG points.

• BS2: High Homozygotes in GnomAd4 at 4 gene

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	#exon/exons	MANE	Protein	UniProt
		n.10183568_10183569delAC		intergenic_region

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	#exon/exons	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.00439 AC: 550 AN: 125378 Hom.: 4 Cov.: 0

Gnomad AFR AF: 0.00426

Gnomad AMI AF: 0.00

Gnomad AMR AF: 0.00439

Gnomad ASJ AF: 0.00941

Gnomad EAS AF: 0.00123

Gnomad SAS AF: 0.00666

Gnomad FIN AF: 0.00631

Gnomad MID AF: 0.00

Gnomad NFE AF: 0.00412

Gnomad OTH AF: 0.00477

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.00438 AC: 550 AN: 125442 Hom.: 4 Cov.: 0 AF XY: 0.00434 AC XY: 258 AN XY: 59398

Gnomad4 AFR AF: 0.00428

Gnomad4 AMR AF: 0.00438

Gnomad4 ASJ AF: 0.00941

Gnomad4 EAS AF: 0.00124

Gnomad4 SAS AF: 0.00639

Gnomad4 FIN AF: 0.00631

Gnomad4 NFE AF: 0.00412

Gnomad4 OTH AF: 0.00471

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs3219790; hg19: chr16-10277424;