16-10183567-GACACACACACACACACAC-GACACACACACACACACACACACACACACAC

Variant summary

Our verdict is Uncertain significance. Variant got 0 ACMG points: 0P and 0B.

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

Genomes: 𝑓 0.078 ( 606 hom., cov: 0)
Failed GnomAD Quality Control

Consequence


intergenic_region

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

PhyloP100: 1.32
Variant links:
Genes affected

Genome browser will be placed here

ACMG classification

Classification made for transcript

Verdict is Uncertain_significance. Variant got 0 ACMG points.

Transcripts

RefSeq

Gene Transcript HGVSc HGVSp Effect #exon/exons MANE Protein UniProt
use as main transcriptn.10183567_10183568insACACACACACAC intergenic_region

Ensembl

Gene Transcript HGVSc HGVSp Effect #exon/exons TSL MANE Protein Appris UniProt

Frequencies

GnomAD3 genomes
AF:
0.00
AC:
9794
AN:
125334
Hom.:
605
Cov.:
0
FAILED QC
Gnomad AFR
AF:
0.0357
Gnomad AMI
AF:
0.00498
Gnomad AMR
AF:
0.121
Gnomad ASJ
AF:
0.102
Gnomad EAS
AF:
0.111
Gnomad SAS
AF:
0.0957
Gnomad FIN
AF:
0.0805
Gnomad MID
AF:
0.0586
Gnomad NFE
AF:
0.0884
Gnomad OTH
AF:
0.0747
We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
GnomAD4 genome
Data not reliable, filtered out with message: AS_VQSR
AF:
0.0781
AC:
9797
AN:
125396
Hom.:
606
Cov.:
0
AF XY:
0.0796
AC XY:
4724
AN XY:
59354
show subpopulations
Gnomad4 AFR
AF:
0.0357
Gnomad4 AMR
AF:
0.121
Gnomad4 ASJ
AF:
0.102
Gnomad4 EAS
AF:
0.110
Gnomad4 SAS
AF:
0.0959
Gnomad4 FIN
AF:
0.0805
Gnomad4 NFE
AF:
0.0884
Gnomad4 OTH
AF:
0.0743

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name
Calibrated prediction
Score
Prediction

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Below is the list of publications found by LitVar. It may be empty.

Other links and lift over

dbSNP: rs3219790; hg19: chr16-10277424; API