16-1967406-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_174903.6(RNF151):c.136C>T(p.Arg46Trp) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000161 in 1,613,320 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_174903.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
RNF151 | NM_174903.6 | c.136C>T | p.Arg46Trp | missense_variant | Exon 2 of 4 | ENST00000569714.6 | NP_777563.2 | |
RNF151 | NM_001348711.2 | c.136C>T | p.Arg46Trp | missense_variant | Exon 2 of 4 | NP_001335640.1 | ||
RNF151 | XM_005255129.5 | c.163C>T | p.Arg55Trp | missense_variant | Exon 2 of 4 | XP_005255186.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
RNF151 | ENST00000569714.6 | c.136C>T | p.Arg46Trp | missense_variant | Exon 2 of 4 | 1 | NM_174903.6 | ENSP00000456566.1 | ||
RNF151 | ENST00000321392.4 | c.133C>T | p.Arg45Trp | missense_variant | Exon 1 of 3 | 1 | ENSP00000325794.3 | |||
RNF151 | ENST00000569210.6 | c.136C>T | p.Arg46Trp | missense_variant | Exon 2 of 4 | 2 | ENSP00000454886.1 |
Frequencies
GnomAD3 genomes AF: 0.0000131 AC: 2AN: 152158Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.0000324 AC: 8AN: 247192Hom.: 0 AF XY: 0.0000297 AC XY: 4AN XY: 134518
GnomAD4 exome AF: 0.0000164 AC: 24AN: 1461044Hom.: 0 Cov.: 32 AF XY: 0.0000206 AC XY: 15AN XY: 726764
GnomAD4 genome AF: 0.0000131 AC: 2AN: 152276Hom.: 0 Cov.: 33 AF XY: 0.0000134 AC XY: 1AN XY: 74452
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.136C>T (p.R46W) alteration is located in exon 2 (coding exon 2) of the RNF151 gene. This alteration results from a C to T substitution at nucleotide position 136, causing the arginine (R) at amino acid position 46 to be replaced by a tryptophan (W). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at