16-2496605-G-C
Variant summary
Our verdict is Likely pathogenic. Variant got 6 ACMG points: 6P and 0B. PM1PM2PM5
The NM_001199107.2(TBC1D24):āc.457G>Cā(p.Glu153Gln) variant causes a missense change. The variant allele was found at a frequency of 0.00000274 in 1,458,176 control chromosomes in the GnomAD database, with no homozygous occurrence. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. E153K) has been classified as Likely pathogenic.
Frequency
Consequence
NM_001199107.2 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Likely_pathogenic. Variant got 6 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD3 exomes AF: 0.00000813 AC: 2AN: 245952Hom.: 0 AF XY: 0.0000149 AC XY: 2AN XY: 134050
GnomAD4 exome AF: 0.00000274 AC: 4AN: 1458176Hom.: 0 Cov.: 31 AF XY: 0.00000413 AC XY: 3AN XY: 725616
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at