16-68736795-GAAA-GAAAA

Variant summary

Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BA1

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

Genomes: 𝑓 0.74 ( 43457 hom., cov: 0)

Consequence

Unknown

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

PhyloP100: 0.752
Variant links:

Genome browser will be placed here

ACMG classification

Verdict is Benign. Variant got -8 ACMG points.

BA1
GnomAd4 highest subpopulation (NFE) allele frequency at 95% confidence interval = 0.863 is higher than 0.05.

Transcripts

RefSeq

Gene Transcript HGVSc HGVSp Effect Exon rank MANE Protein UniProt

Ensembl

Gene Transcript HGVSc HGVSp Effect Exon rank TSL MANE Protein Appris UniProt

Frequencies

GnomAD3 genomes
AF:
0.742
AC:
111447
AN:
150160
Hom.:
43458
Cov.:
0
show subpopulations
Gnomad AFR
AF:
0.478
Gnomad AMI
AF:
0.922
Gnomad AMR
AF:
0.765
Gnomad ASJ
AF:
0.911
Gnomad EAS
AF:
0.770
Gnomad SAS
AF:
0.775
Gnomad FIN
AF:
0.814
Gnomad MID
AF:
0.804
Gnomad NFE
AF:
0.869
Gnomad OTH
AF:
0.769
We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
GnomAD4 genome
AF:
0.742
AC:
111472
AN:
150274
Hom.:
43457
Cov.:
0
AF XY:
0.740
AC XY:
54214
AN XY:
73268
show subpopulations
Gnomad4 AFR
AF:
0.478
Gnomad4 AMR
AF:
0.765
Gnomad4 ASJ
AF:
0.911
Gnomad4 EAS
AF:
0.770
Gnomad4 SAS
AF:
0.775
Gnomad4 FIN
AF:
0.814
Gnomad4 NFE
AF:
0.869
Gnomad4 OTH
AF:
0.766
Alfa
AF:
0.758
Hom.:
1595

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name
Calibrated prediction
Score
Prediction

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Below is the list of publications found by LitVar. It may be empty.

Other links and lift over

dbSNP: rs34561447; hg19: chr16-68770698; API