17-3732446-C-G
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_002208.5(ITGAE):c.2676G>C(p.Gln892His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0597 in 1,613,628 control chromosomes in the GnomAD database, including 4,012 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
NM_002208.5 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ITGAE | NM_002208.5 | c.2676G>C | p.Gln892His | missense_variant | 22/31 | ENST00000263087.9 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ITGAE | ENST00000263087.9 | c.2676G>C | p.Gln892His | missense_variant | 22/31 | 1 | NM_002208.5 | P1 | |
ITGAE | ENST00000574026.2 | c.260-1263G>C | intron_variant | 3 | |||||
ITGAE | ENST00000571185.1 | n.247G>C | non_coding_transcript_exon_variant | 3/7 | 3 |
Frequencies
GnomAD3 genomes ? AF: 0.0805 AC: 12244AN: 152146Hom.: 673 Cov.: 32
GnomAD3 exomes AF: 0.0796 AC: 20003AN: 251448Hom.: 1315 AF XY: 0.0712 AC XY: 9683AN XY: 135902
GnomAD4 exome AF: 0.0575 AC: 84072AN: 1461364Hom.: 3338 Cov.: 32 AF XY: 0.0559 AC XY: 40675AN XY: 727046
GnomAD4 genome ? AF: 0.0805 AC: 12254AN: 152264Hom.: 674 Cov.: 32 AF XY: 0.0813 AC XY: 6049AN XY: 74434
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at