17-41118014-C-T
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_033059.4(KRTAP4-11):c.302G>A(p.Arg101His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000059 in 1,390,144 control chromosomes in the GnomAD database, including 3 homozygotes. In-silico tool predicts a benign outcome for this variant. 13/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R101C) has been classified as Uncertain significance.
Frequency
Consequence
NM_033059.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
KRTAP4-11 | NM_033059.4 | c.302G>A | p.Arg101His | missense_variant | 1/1 | ENST00000391413.4 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
KRTAP4-11 | ENST00000391413.4 | c.302G>A | p.Arg101His | missense_variant | 1/1 | NM_033059.4 | P1 |
Frequencies
GnomAD3 genomes AF: 0.000251 AC: 25AN: 99456Hom.: 1 Cov.: 25
GnomAD3 exomes AF: 0.0000449 AC: 11AN: 244858Hom.: 1 AF XY: 0.0000300 AC XY: 4AN XY: 133516
GnomAD4 exome AF: 0.0000442 AC: 57AN: 1290688Hom.: 2 Cov.: 197 AF XY: 0.0000456 AC XY: 29AN XY: 635724
GnomAD4 genome AF: 0.000251 AC: 25AN: 99456Hom.: 1 Cov.: 25 AF XY: 0.000230 AC XY: 11AN XY: 47772
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at