17-7383007-T-A
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6BP7BA1
The NM_003985.6(TNK1):c.81T>A(p.Leu27Leu) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.455 in 1,613,690 control chromosomes in the GnomAD database, including 171,350 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (no stars).
Frequency
Consequence
NM_003985.6 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.400 AC: 60703AN: 151928Hom.: 12656 Cov.: 32
GnomAD3 exomes AF: 0.417 AC: 104010AN: 249146Hom.: 22868 AF XY: 0.432 AC XY: 58411AN XY: 135172
GnomAD4 exome AF: 0.461 AC: 673339AN: 1461642Hom.: 158692 Cov.: 65 AF XY: 0.465 AC XY: 338224AN XY: 727106
GnomAD4 genome AF: 0.399 AC: 60728AN: 152048Hom.: 12658 Cov.: 32 AF XY: 0.395 AC XY: 29363AN XY: 74320
ClinVar
Submissions by phenotype
TNK1-related disorder Benign:1
This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at