17-76737321-G-C
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_001195427.2(SRSF2):c.-161C>G variant causes a 5 prime UTR premature start codon gain change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000451 in 975,418 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001195427.2 5_prime_UTR_premature_start_codon_gain
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
SRSF2 | NM_001195427.2 | c.-161C>G | 5_prime_UTR_premature_start_codon_gain_variant | Exon 1 of 3 | ENST00000359995.10 | NP_001182356.1 | ||
SRSF2 | NM_001195427.2 | c.-161C>G | 5_prime_UTR_variant | Exon 1 of 3 | ENST00000359995.10 | NP_001182356.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SRSF2 | ENST00000359995.10 | c.-161C>G | 5_prime_UTR_premature_start_codon_gain_variant | Exon 1 of 3 | 1 | NM_001195427.2 | ENSP00000353089.5 | |||
SRSF2 | ENST00000359995.10 | c.-161C>G | 5_prime_UTR_variant | Exon 1 of 3 | 1 | NM_001195427.2 | ENSP00000353089.5 | |||
ENSG00000267168 | ENST00000587459.1 | c.239-961G>C | intron_variant | Intron 1 of 1 | 5 | ENSP00000466829.1 |
Frequencies
GnomAD3 genomes AF: 0.000197 AC: 30AN: 152096Hom.: 0 Cov.: 35
GnomAD4 exome AF: 0.0000170 AC: 14AN: 823204Hom.: 0 Cov.: 10 AF XY: 0.00000734 AC XY: 3AN XY: 408738
GnomAD4 genome AF: 0.000197 AC: 30AN: 152214Hom.: 0 Cov.: 35 AF XY: 0.000202 AC XY: 15AN XY: 74388
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at