18-35479342-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_194281.4(INO80C):c.337G>A(p.Ala113Thr) variant causes a missense change. The variant allele was found at a frequency of 0.0000644 in 1,613,946 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_194281.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
INO80C | ENST00000334598.12 | c.337G>A | p.Ala113Thr | missense_variant | Exon 3 of 5 | 1 | NM_194281.4 | ENSP00000334473.6 | ||
ENSG00000267140 | ENST00000589258.1 | c.156+18377G>A | intron_variant | Intron 1 of 2 | 3 | ENSP00000467041.1 |
Frequencies
GnomAD3 genomes AF: 0.0000460 AC: 7AN: 152166Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000123 AC: 31AN: 251330Hom.: 0 AF XY: 0.000214 AC XY: 29AN XY: 135828
GnomAD4 exome AF: 0.0000664 AC: 97AN: 1461780Hom.: 0 Cov.: 30 AF XY: 0.000103 AC XY: 75AN XY: 727182
GnomAD4 genome AF: 0.0000460 AC: 7AN: 152166Hom.: 0 Cov.: 32 AF XY: 0.0000673 AC XY: 5AN XY: 74330
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.445G>A (p.A149T) alteration is located in exon 5 (coding exon 5) of the INO80C gene. This alteration results from a G to A substitution at nucleotide position 445, causing the alanine (A) at amino acid position 149 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at