19-49860109-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_001364747.2(PTOV1):āc.1210G>Cā(p.Gly404Arg) variant causes a missense change. The variant allele was found at a frequency of 0.0000157 in 1,461,888 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001364747.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
PTOV1 | NM_001364747.2 | c.1210G>C | p.Gly404Arg | missense_variant | Exon 11 of 13 | NP_001351676.1 | ||
PTOV1 | NM_001364749.2 | c.1210G>C | p.Gly404Arg | missense_variant | Exon 11 of 13 | NP_001351678.1 | ||
PTOV1 | NM_001305105.2 | c.1165G>C | p.Gly389Arg | missense_variant | Exon 11 of 13 | NP_001292034.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD3 exomes AF: 0.0000318 AC: 8AN: 251402Hom.: 0 AF XY: 0.0000589 AC XY: 8AN XY: 135900
GnomAD4 exome AF: 0.0000157 AC: 23AN: 1461888Hom.: 0 Cov.: 34 AF XY: 0.0000261 AC XY: 19AN XY: 727246
GnomAD4 genome Cov.: 33
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.1165G>C (p.G389R) alteration is located in exon 11 (coding exon 11) of the PTOV1 gene. This alteration results from a G to C substitution at nucleotide position 1165, causing the glycine (G) at amino acid position 389 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at