19-50323013-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_004977.3(KCNC3):āc.1940C>Gā(p.Pro647Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000716 in 1,396,298 control chromosomes in the GnomAD database, with no homozygous occurrence. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_004977.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
KCNC3 | NM_004977.3 | c.1940C>G | p.Pro647Arg | missense_variant | Exon 2 of 5 | ENST00000477616.2 | NP_004968.2 | |
KCNC3 | NM_001372305.1 | c.1712C>G | p.Pro571Arg | missense_variant | Exon 2 of 5 | NP_001359234.1 | ||
KCNC3 | NR_110912.2 | n.69-2229C>G | intron_variant | Intron 1 of 3 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
KCNC3 | ENST00000477616.2 | c.1940C>G | p.Pro647Arg | missense_variant | Exon 2 of 5 | 1 | NM_004977.3 | ENSP00000434241.1 | ||
KCNC3 | ENST00000670667.1 | c.1940C>G | p.Pro647Arg | missense_variant | Exon 2 of 4 | ENSP00000499301.1 | ||||
KCNC3 | ENST00000376959.6 | c.1940C>G | p.Pro647Arg | missense_variant | Exon 2 of 5 | 5 | ENSP00000366158.2 | |||
KCNC3 | ENST00000474951.1 | c.-74-2229C>G | intron_variant | Intron 1 of 3 | 2 | ENSP00000432438.1 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome AF: 7.16e-7 AC: 1AN: 1396298Hom.: 0 Cov.: 33 AF XY: 0.00000145 AC XY: 1AN XY: 688670
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.