19-56088502-C-T
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_001002836.4(ZNF787):c.670G>A(p.Glu224Lys) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000755 in 1,403,976 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001002836.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000344 AC: 52AN: 151376Hom.: 0 Cov.: 32
GnomAD4 exome AF: 0.0000431 AC: 54AN: 1252498Hom.: 0 Cov.: 34 AF XY: 0.0000375 AC XY: 23AN XY: 613992
GnomAD4 genome AF: 0.000343 AC: 52AN: 151478Hom.: 0 Cov.: 32 AF XY: 0.000257 AC XY: 19AN XY: 74048
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.670G>A (p.E224K) alteration is located in exon 3 (coding exon 2) of the ZNF787 gene. This alteration results from a G to A substitution at nucleotide position 670, causing the glutamic acid (E) at amino acid position 224 to be replaced by a lysine (K). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at