19-8371404-C-T
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6BP7BA1
The NM_139314.3(ANGPTL4):c.921C>T(p.Pro307Pro) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00674 in 1,613,432 control chromosomes in the GnomAD database, including 619 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (no stars).
Frequency
Consequence
NM_139314.3 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0349 AC: 5315AN: 152192Hom.: 318 Cov.: 32
GnomAD3 exomes AF: 0.00902 AC: 2248AN: 249214Hom.: 133 AF XY: 0.00681 AC XY: 921AN XY: 135152
GnomAD4 exome AF: 0.00380 AC: 5552AN: 1461122Hom.: 301 Cov.: 34 AF XY: 0.00334 AC XY: 2426AN XY: 726880
GnomAD4 genome AF: 0.0350 AC: 5330AN: 152310Hom.: 318 Cov.: 32 AF XY: 0.0343 AC XY: 2552AN XY: 74478
ClinVar
Submissions by phenotype
ANGPTL4-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at