19-9251064-CTTT-CTTTTT
Variant names:
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_001079935.2(OR7E24):c.31_32dupTT(p.Leu12SerfsTer89) variant causes a frameshift change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000371 in 1,052,508 control chromosomes in the GnomAD database, with no homozygous occurrence. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Genomes: 𝑓 0.0 ( 0 hom., cov: 32)
Exomes 𝑓: 0.000037 ( 0 hom. )
Failed GnomAD Quality Control
Consequence
OR7E24
NM_001079935.2 frameshift
NM_001079935.2 frameshift
Scores
Not classified
Clinical Significance
Not reported in ClinVar
Conservation
PhyloP100: -0.465
Genes affected
OR7E24 (HGNC:8396): (olfactory receptor family 7 subfamily E member 24) Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
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ACMG classification
Classification made for transcript
Verdict is Uncertain_significance. Variant got 2 ACMG points.
PM2
Very rare variant in population databases, with high coverage;
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
OR7E24 | ENST00000456448.3 | c.31_32dupTT | p.Leu12SerfsTer89 | frameshift_variant | Exon 1 of 1 | 6 | NM_001079935.2 | ENSP00000387523.1 | ||
OR7E24 | ENST00000641946.1 | c.30-11_30-10dupTT | intron_variant | Intron 1 of 1 | ENSP00000494223.1 |
Frequencies
GnomAD3 genomes AF: 0.00 AC: 0AN: 147888Hom.: 0 Cov.: 32 FAILED QC
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GnomAD4 exome AF: 0.0000371 AC: 39AN: 1052508Hom.: 0 Cov.: 30 AF XY: 0.0000440 AC XY: 23AN XY: 523242
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GnomAD4 genome Data not reliable, filtered out with message: AC0 AF: 0.00 AC: 0AN: 147888Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 71934
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ClinVar
Not reported inComputational scores
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Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at