2-224793015-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_014689.3(DOCK10):c.5270C>G(p.Pro1757Arg) variant causes a missense change. The variant allele was found at a frequency of 0.0000151 in 1,461,436 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 14/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. P1757S) has been classified as Uncertain significance.
Frequency
Consequence
NM_014689.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
DOCK10 | NM_014689.3 | c.5270C>G | p.Pro1757Arg | missense_variant | 47/56 | ENST00000258390.12 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
DOCK10 | ENST00000258390.12 | c.5270C>G | p.Pro1757Arg | missense_variant | 47/56 | 5 | NM_014689.3 | P3 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD3 exomes AF: 0.00000402 AC: 1AN: 248936Hom.: 0 AF XY: 0.00000740 AC XY: 1AN XY: 135052
GnomAD4 exome AF: 0.0000151 AC: 22AN: 1461436Hom.: 0 Cov.: 30 AF XY: 0.0000165 AC XY: 12AN XY: 727006
GnomAD4 genome ? Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Feb 14, 2023 | The c.5270C>G (p.P1757R) alteration is located in exon 47 (coding exon 47) of the DOCK10 gene. This alteration results from a C to G substitution at nucleotide position 5270, causing the proline (P) at amino acid position 1757 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at