2-37952271-CTG-CTGTG

Variant names:

• chr2-37952271-C-CTG
• rs59393160
• NM_001170791.3:c.453-21767_453-21766dupGT

Variant summary

Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.

The NM_001170791.3(RMDN2):​c.453-21767_453-21766dupGT variant causes a intron change involving the alteration of a non-conserved nucleotide. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: not found (cov: 0)
• Consequence: RMDN2 NM_001170791.3 intron
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -0.878
• Publications: 4 publications found

Genes affected

RMDN2 (HGNC:26567): (regulator of microtubule dynamics 2) Enables microtubule binding activity. Located in Golgi apparatus; cytosol; and spindle. [provided by Alliance of Genome Resources, Apr 2022]

RMDN2-AS1 (HGNC:41150): (RMDN2 antisense RNA 1)

ACMG classification

Our verdict: Uncertain_significance. The variant received 0 ACMG points.

Variant Effect in Transcripts

ACMG analysis was done for transcript: NM_001170791.3. You can select a different transcript below to see updated ACMG assignments.

RefSeq Transcripts

Selected	Gene	Transcript	Tags	HGVSc	HGVSp	Effect	Exon Rank	Protein	UniProt
	RMDN2	NM_001170791.3	MANE Select	c.453-21767_453-21766dupGT		intron	N/A	NP_001164262.1
	RMDN2	NM_144713.5		c.986+72_986+73dupGT		intron	N/A	NP_653314.3
	RMDN2	NM_001170792.3		c.453-21767_453-21766dupGT		intron	N/A	NP_001164263.1

Ensembl Transcripts

Selected	Gene	Transcript	Tags	HGVSc	HGVSp	Effect	Exon Rank	Protein	UniProt
	RMDN2	ENST00000354545.8	TSL:1 MANE Select	c.453-21767_453-21766dupGT		intron	N/A	ENSP00000346549.3
	RMDN2	ENST00000406384.5	TSL:1	c.453-21767_453-21766dupGT		intron	N/A	ENSP00000386004.1
	RMDN2	ENST00000417700.6	TSL:1	c.17+1678_17+1679dupGT		intron	N/A	ENSP00000392977.2

Frequencies

GnomAD3 genomes Cov.: 0

GnomAD4 exome Cov.: 0

GnomAD4 genome Cov.: 0

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.9

Name	Calibrated prediction	Score	Prediction
PhyloP100		-0.88

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Other links and lift over

dbSNP: rs59393160; hg19: chr2-38179414;