2-97759036-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_015348.2(TMEM131):c.5224G>A(p.Gly1742Arg) variant causes a missense change. The variant allele was found at a frequency of 0.0000409 in 1,613,926 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_015348.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TMEM131 | ENST00000186436.10 | c.5224G>A | p.Gly1742Arg | missense_variant | Exon 40 of 41 | 5 | NM_015348.2 | ENSP00000186436.5 | ||
TMEM131 | ENST00000485245.2 | n.6282G>A | non_coding_transcript_exon_variant | Exon 1 of 2 | 1 | |||||
TMEM131 | ENST00000469447.1 | n.462G>A | non_coding_transcript_exon_variant | Exon 2 of 2 | 3 |
Frequencies
GnomAD3 genomes AF: 0.0000263 AC: 4AN: 152216Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.0000321 AC: 8AN: 249256Hom.: 0 AF XY: 0.0000444 AC XY: 6AN XY: 135220
GnomAD4 exome AF: 0.0000424 AC: 62AN: 1461710Hom.: 0 Cov.: 31 AF XY: 0.0000440 AC XY: 32AN XY: 727138
GnomAD4 genome AF: 0.0000263 AC: 4AN: 152216Hom.: 0 Cov.: 33 AF XY: 0.0000403 AC XY: 3AN XY: 74360
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.5224G>A (p.G1742R) alteration is located in exon 40 (coding exon 40) of the TMEM131 gene. This alteration results from a G to A substitution at nucleotide position 5224, causing the glycine (G) at amino acid position 1742 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at