20-10312880-A-G
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000421143.6(SNAP25-AS1):n.5+55835T>C variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.252 in 152,078 control chromosomes in the GnomAD database, including 6,226 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000421143.6 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
SNAP25-AS1 | ENST00000421143.6 | n.5+55835T>C | intron_variant, non_coding_transcript_variant | 5 | |||||
SNAP25-AS1 | ENST00000453544.5 | n.62+55835T>C | intron_variant, non_coding_transcript_variant | 5 | |||||
SNAP25-AS1 | ENST00000692436.2 | n.117+55835T>C | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes AF: 0.252 AC: 38302AN: 151960Hom.: 6230 Cov.: 32
GnomAD4 genome AF: 0.252 AC: 38315AN: 152078Hom.: 6226 Cov.: 32 AF XY: 0.250 AC XY: 18586AN XY: 74362
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at