21-44109038-G-A
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BP4_Strong
The NM_005049.3(PWP2):c.73G>A(p.Asp25Asn) variant causes a missense change involving the alteration of a conserved nucleotide. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. D25G) has been classified as Uncertain significance.
Frequency
Consequence
NM_005049.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -4 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
PWP2 | NM_005049.3 | c.73G>A | p.Asp25Asn | missense_variant | 2/21 | ENST00000291576.12 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
PWP2 | ENST00000291576.12 | c.73G>A | p.Asp25Asn | missense_variant | 2/21 | 1 | NM_005049.3 | P1 | |
PWP2 | ENST00000456705.1 | c.73G>A | p.Asp25Asn | missense_variant | 2/6 | 3 |
Frequencies
GnomAD3 genomes Cov.: 9
GnomAD3 exomes AF: 0.724 AC: 181913AN: 251288Hom.: 68303 AF XY: 0.729 AC XY: 98984AN XY: 135830
GnomAD4 exome Cov.: 0
GnomAD4 genome Cov.: 9
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at