22-37491181-C-T
Variant summary
Our verdict is Likely benign. Variant got -6 ACMG points: 0P and 6B. BP4_StrongBP6_Moderate
The NM_014550.4(CARD10):c.3077G>A(p.Cys1026Tyr) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000542 in 1,567,024 control chromosomes in the GnomAD database, including 6 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★).
Frequency
Consequence
NM_014550.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -6 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CARD10 | NM_014550.4 | c.3077G>A | p.Cys1026Tyr | missense_variant | 20/20 | ENST00000251973.10 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CARD10 | ENST00000251973.10 | c.3077G>A | p.Cys1026Tyr | missense_variant | 20/20 | 1 | NM_014550.4 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.000664 AC: 101AN: 152088Hom.: 0 Cov.: 31
GnomAD3 exomes AF: 0.00130 AC: 228AN: 174846Hom.: 0 AF XY: 0.00124 AC XY: 118AN XY: 95048
GnomAD4 exome AF: 0.000529 AC: 748AN: 1414818Hom.: 6 Cov.: 31 AF XY: 0.000543 AC XY: 380AN XY: 699960
GnomAD4 genome ? AF: 0.000664 AC: 101AN: 152206Hom.: 0 Cov.: 31 AF XY: 0.000739 AC XY: 55AN XY: 74420
ClinVar
Submissions by phenotype
CARD10-related disorder Benign:1
Benign, criteria provided, single submitter | clinical testing | PreventionGenetics, part of Exact Sciences | Sep 17, 2019 | This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at