3-36897795-G-C
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_001329998.2(TRANK1):c.433+1314C>G variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000658 in 152,002 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001329998.2 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TRANK1 | NM_001329998.2 | c.433+1314C>G | intron_variant | Intron 4 of 23 | ENST00000645898.2 | NP_001316927.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TRANK1 | ENST00000645898.2 | c.433+1314C>G | intron_variant | Intron 4 of 23 | NM_001329998.2 | ENSP00000494480.1 | ||||
TRANK1 | ENST00000429976.5 | c.301+1314C>G | intron_variant | Intron 3 of 22 | 5 | ENSP00000416168.2 | ||||
TRANK1 | ENST00000646897.1 | n.409+1314C>G | intron_variant | Intron 5 of 25 | ENSP00000496771.1 |
Frequencies
GnomAD3 genomes AF: 0.00000658 AC: 1AN: 152002Hom.: 0 Cov.: 33
GnomAD4 genome AF: 0.00000658 AC: 1AN: 152002Hom.: 0 Cov.: 33 AF XY: 0.00 AC XY: 0AN XY: 74248
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.