3-58008405-C-G
Variant summary
Our verdict is Likely benign. Variant got -3 ACMG points: 2P and 5B. PM2BP4_StrongBS1_Supporting
The ENST00000490882(FLNB):c.-160C>G variant causes a 5 prime UTR change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000651 in 736,996 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
ENST00000490882 5_prime_UTR
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
FLNB | NM_001457.4 | c.-160C>G | upstream_gene_variant | ENST00000295956.9 | NP_001448.2 | |||
FLNB | NM_001164317.2 | c.-160C>G | upstream_gene_variant | NP_001157789.1 | ||||
FLNB | NM_001164318.2 | c.-160C>G | upstream_gene_variant | NP_001157790.1 | ||||
FLNB | NM_001164319.2 | c.-160C>G | upstream_gene_variant | NP_001157791.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000232 AC: 35AN: 150632Hom.: 0 Cov.: 33
GnomAD4 exome AF: 0.0000222 AC: 13AN: 586262Hom.: 0 Cov.: 8 AF XY: 0.0000332 AC XY: 10AN XY: 301356
GnomAD4 genome AF: 0.000232 AC: 35AN: 150734Hom.: 0 Cov.: 33 AF XY: 0.000217 AC XY: 16AN XY: 73594
ClinVar
Submissions by phenotype
FLNB-Related Spectrum Disorders Uncertain:1
This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases did not allow this variant to be ruled in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at