4-57032426-C-A
Variant summary
Our verdict is Uncertain significance. Variant got 4 ACMG points: 4P and 0B. PM2PM5
The NM_001553.3(IGFBP7):c.829G>T(p.Gly277Cys) variant causes a missense, splice region change. The variant allele was found at a frequency of 0.0000185 in 1,461,372 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 1/1 splice prediction tools predicting alterations to normal splicing. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. G277S) has been classified as Pathogenic.
Frequency
Consequence
NM_001553.3 missense, splice_region
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 4 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
IGFBP7 | ENST00000295666.6 | c.829G>T | p.Gly277Cys | missense_variant, splice_region_variant | Exon 4 of 5 | 1 | NM_001553.3 | ENSP00000295666.4 | ||
IGFBP7 | ENST00000514062.2 | c.829G>T | p.Gly277Cys | missense_variant | Exon 4 of 4 | 2 | ENSP00000486293.1 | |||
IGFBP7 | ENST00000512512.3 | n.469G>T | splice_region_variant, non_coding_transcript_exon_variant | Exon 4 of 5 | 5 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome AF: 0.0000185 AC: 27AN: 1461372Hom.: 0 Cov.: 30 AF XY: 0.0000193 AC XY: 14AN XY: 726984
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.