4-88113319-T-C
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_004827.3(ABCG2):āc.1178A>Gā(p.Gln393Arg) variant causes a missense change. The variant allele was found at a frequency of 0.0000248 in 1,614,010 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_004827.3 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ABCG2 | ENST00000237612.8 | c.1178A>G | p.Gln393Arg | missense_variant | Exon 9 of 16 | 1 | NM_004827.3 | ENSP00000237612.3 | ||
ABCG2 | ENST00000515655.5 | c.1178A>G | p.Gln393Arg | missense_variant | Exon 9 of 16 | 1 | ENSP00000426917.1 | |||
ABCG2 | ENST00000650821.1 | c.1178A>G | p.Gln393Arg | missense_variant | Exon 10 of 17 | ENSP00000498246.1 |
Frequencies
GnomAD3 genomes AF: 0.0000394 AC: 6AN: 152184Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000279 AC: 7AN: 251184Hom.: 0 AF XY: 0.0000368 AC XY: 5AN XY: 135762
GnomAD4 exome AF: 0.0000233 AC: 34AN: 1461826Hom.: 0 Cov.: 31 AF XY: 0.0000358 AC XY: 26AN XY: 727218
GnomAD4 genome AF: 0.0000394 AC: 6AN: 152184Hom.: 0 Cov.: 32 AF XY: 0.0000673 AC XY: 5AN XY: 74340
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.1178A>G (p.Q393R) alteration is located in exon 9 (coding exon 8) of the ABCG2 gene. This alteration results from a A to G substitution at nucleotide position 1178, causing the glutamine (Q) at amino acid position 393 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at