4-99131667-C-A
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_000670.5(ADH4):c.680G>T(p.Gly227Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00228 in 1,614,130 control chromosomes in the GnomAD database, including 7 homozygotes. In-silico tool predicts a benign outcome for this variant. 13/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_000670.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ADH4 | NM_000670.5 | c.680G>T | p.Gly227Val | missense_variant | Exon 6 of 9 | ENST00000265512.12 | NP_000661.2 | |
ADH4 | NM_001306171.2 | c.737G>T | p.Gly246Val | missense_variant | Exon 7 of 10 | NP_001293100.1 | ||
ADH4 | NM_001306172.2 | c.737G>T | p.Gly246Val | missense_variant | Exon 7 of 10 | NP_001293101.1 | ||
LOC100507053 | NR_037884.1 | n.429-1888C>A | intron_variant | Intron 1 of 9 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00139 AC: 211AN: 152148Hom.: 1 Cov.: 32
GnomAD3 exomes AF: 0.00104 AC: 261AN: 251354Hom.: 0 AF XY: 0.000950 AC XY: 129AN XY: 135842
GnomAD4 exome AF: 0.00238 AC: 3476AN: 1461864Hom.: 6 Cov.: 36 AF XY: 0.00229 AC XY: 1662AN XY: 727236
GnomAD4 genome AF: 0.00139 AC: 212AN: 152266Hom.: 1 Cov.: 32 AF XY: 0.00109 AC XY: 81AN XY: 74454
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.680G>T (p.G227V) alteration is located in exon 6 (coding exon 6) of the ADH4 gene. This alteration results from a G to T substitution at nucleotide position 680, causing the glycine (G) at amino acid position 227 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at