5-111484269-A-G
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_001744.6(CAMK4):c.1225A>G(p.Asn409Asp) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000353 in 1,614,124 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 16/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001744.6 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CAMK4 | NM_001744.6 | c.1225A>G | p.Asn409Asp | missense_variant | 11/11 | ENST00000282356.9 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CAMK4 | ENST00000282356.9 | c.1225A>G | p.Asn409Asp | missense_variant | 11/11 | 1 | NM_001744.6 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.0000394 AC: 6AN: 152254Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000481 AC: 12AN: 249734Hom.: 0 AF XY: 0.0000444 AC XY: 6AN XY: 135152
GnomAD4 exome AF: 0.0000349 AC: 51AN: 1461752Hom.: 0 Cov.: 33 AF XY: 0.0000206 AC XY: 15AN XY: 727160
GnomAD4 genome ? AF: 0.0000394 AC: 6AN: 152372Hom.: 0 Cov.: 32 AF XY: 0.0000537 AC XY: 4AN XY: 74510
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Oct 06, 2021 | The c.1225A>G (p.N409D) alteration is located in exon 11 (coding exon 11) of the CAMK4 gene. This alteration results from a A to G substitution at nucleotide position 1225, causing the asparagine (N) at amino acid position 409 to be replaced by an aspartic acid (D). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at