5-128966514-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_001017372.3(SLC27A6):c.377C>T(p.Ala126Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000156 in 1,605,700 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001017372.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
SLC27A6 | NM_001017372.3 | c.377C>T | p.Ala126Val | missense_variant | Exon 1 of 10 | ENST00000262462.9 | NP_001017372.1 | |
SLC27A6 | NM_001317984.2 | c.377C>T | p.Ala126Val | missense_variant | Exon 2 of 11 | NP_001304913.1 | ||
SLC27A6 | NM_014031.5 | c.377C>T | p.Ala126Val | missense_variant | Exon 2 of 11 | NP_054750.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SLC27A6 | ENST00000262462.9 | c.377C>T | p.Ala126Val | missense_variant | Exon 1 of 10 | 1 | NM_001017372.3 | ENSP00000262462.4 | ||
SLC27A6 | ENST00000395266.5 | c.377C>T | p.Ala126Val | missense_variant | Exon 2 of 11 | 1 | ENSP00000378684.1 | |||
SLC27A6 | ENST00000506176.1 | c.377C>T | p.Ala126Val | missense_variant | Exon 2 of 11 | 1 | ENSP00000421024.1 | |||
SLC27A6 | ENST00000508645.5 | c.-62-18619C>T | intron_variant | Intron 3 of 6 | 5 | ENSP00000421759.1 |
Frequencies
GnomAD3 genomes AF: 0.000118 AC: 18AN: 152154Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.0000207 AC: 5AN: 241404Hom.: 0 AF XY: 0.0000153 AC XY: 2AN XY: 130340
GnomAD4 exome AF: 0.00000482 AC: 7AN: 1453546Hom.: 0 Cov.: 34 AF XY: 0.00000415 AC XY: 3AN XY: 722704
GnomAD4 genome AF: 0.000118 AC: 18AN: 152154Hom.: 0 Cov.: 33 AF XY: 0.000135 AC XY: 10AN XY: 74330
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.377C>T (p.A126V) alteration is located in exon 1 (coding exon 1) of the SLC27A6 gene. This alteration results from a C to T substitution at nucleotide position 377, causing the alanine (A) at amino acid position 126 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at