5-132673301-G-GAA

Variant summary

Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

Genomes: 𝑓 0.00016 ( 0 hom., cov: 0)

Consequence

Unknown

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

PhyloP100: 0.885

Publications

1 publications found
Variant links:

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ACMG classification

Our verdict: Uncertain_significance. The variant received 0 ACMG points.

Variant Effect in Transcripts

 

RefSeq Transcripts

Selected
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt

There are no transcript annotations for this variant.

Ensembl Transcripts

Selected
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt

There are no transcript annotations for this variant.

Frequencies

GnomAD3 genomes
AF:
0.000154
AC:
21
AN:
136112
Hom.:
0
Cov.:
0
show subpopulations
Gnomad AFR
AF:
0.000286
Gnomad AMI
AF:
0.00
Gnomad AMR
AF:
0.000363
Gnomad ASJ
AF:
0.00
Gnomad EAS
AF:
0.00
Gnomad SAS
AF:
0.000234
Gnomad FIN
AF:
0.000376
Gnomad MID
AF:
0.00
Gnomad NFE
AF:
0.0000155
Gnomad OTH
AF:
0.000534
We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
GnomAD4 genome
AF:
0.000162
AC:
22
AN:
136122
Hom.:
0
Cov.:
0
AF XY:
0.000169
AC XY:
11
AN XY:
65252
show subpopulations
African (AFR)
AF:
0.000314
AC:
11
AN:
35046
American (AMR)
AF:
0.000363
AC:
5
AN:
13764
Ashkenazi Jewish (ASJ)
AF:
0.00
AC:
0
AN:
3330
East Asian (EAS)
AF:
0.00
AC:
0
AN:
4350
South Asian (SAS)
AF:
0.000235
AC:
1
AN:
4250
European-Finnish (FIN)
AF:
0.000376
AC:
3
AN:
7980
Middle Eastern (MID)
AF:
0.00
AC:
0
AN:
272
European-Non Finnish (NFE)
AF:
0.0000155
AC:
1
AN:
64362
Other (OTH)
AF:
0.000529
AC:
1
AN:
1890
Allele Balance Distribution
Red line indicates average allele balance
Average allele balance: 0.432
Heterozygous variant carriers
0
1
2
2
3
4
0.00
0.20
0.40
0.60
0.80
0.95
Allele balance

Age Distribution

Genome Het
Variant carriers
0
2
4
6
8
10
<30
30-35
35-40
40-45
45-50
50-55
55-60
60-65
65-70
70-75
75-80
>80
Age
Alfa
AF:
0.00
Hom.:
766

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.9

Name
Calibrated prediction
Score
Prediction
PhyloP100
0.89

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

Other links and lift over

dbSNP: rs34185442; hg19: chr5-132008993; API