6-137694988-A-G
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000635999.1(LINC03004):n.433+20864A>G variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.52 in 152,032 control chromosomes in the GnomAD database, including 22,221 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000635999.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LOC124901411 | XR_007059789.1 | n.163+1761A>G | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
LINC03004 | ENST00000635999.1 | n.433+20864A>G | intron_variant, non_coding_transcript_variant | 5 | |||||
ENST00000637996.1 | n.160+1761A>G | intron_variant, non_coding_transcript_variant | 5 | ||||||
LINC03004 | ENST00000646621.1 | n.601+6299A>G | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes AF: 0.520 AC: 79044AN: 151914Hom.: 22184 Cov.: 32
GnomAD4 genome AF: 0.520 AC: 79129AN: 152032Hom.: 22221 Cov.: 32 AF XY: 0.524 AC XY: 38924AN XY: 74304
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at