6-35411206-G-A
Variant summary
Our verdict is Likely benign. Variant got -6 ACMG points: 0P and 6B. BP4_ModerateBS2
The NM_006238.5(PPARD):c.119G>A(p.Ser40Asn) variant causes a missense change. The variant allele was found at a frequency of 0.0000101 in 1,388,056 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_006238.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -6 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
PPARD | NM_006238.5 | c.119G>A | p.Ser40Asn | missense_variant | Exon 3 of 8 | ENST00000360694.8 | NP_006229.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.0000468 AC: 9AN: 192280Hom.: 0 AF XY: 0.0000485 AC XY: 5AN XY: 103174
GnomAD4 exome AF: 0.0000101 AC: 14AN: 1388056Hom.: 0 Cov.: 33 AF XY: 0.00000872 AC XY: 6AN XY: 688158
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.119G>A (p.S40N) alteration is located in exon 4 (coding exon 1) of the PPARD gene. This alteration results from a G to A substitution at nucleotide position 119, causing the serine (S) at amino acid position 40 to be replaced by an asparagine (N). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at