7-129206557-C-T
Variant summary
Our verdict is Likely pathogenic. Variant got 8 ACMG points: 8P and 0B. PM1PM2PP3_ModeratePP5_Moderate
The NM_005631.5(SMO):c.1234C>T(p.Leu412Phe) variant causes a missense change. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Pathogenic (★).
Frequency
Consequence
NM_005631.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_pathogenic. Variant got 8 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome Cov.: 42
GnomAD4 genome Cov.: 33
ClinVar
Submissions by phenotype
Curry-Jones syndrome Pathogenic:2
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A somatic c.1234C>T (p.L412F) pathogenic variant in the SMO gene was detected in this individual’s affected skin sample. Whole genome sequencing analysis of this region on this individual’s unaffected skin sample and parental samples for this individual did not detect the c.1234C>T (p.L412F) change, suggesting it arose in this individual’s somatic tissues as a mosaic change. The c.1234C>T (p.L412F) variant has been reported as a recurrent somatic mutation in multiple affected individuals [PMID 27236920]. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at