7-142307367-AGTGTGTGTGTGTGTGTGT-AGTGTGTGTGTGTGTGTGTGTGTGTGTGT

Position:

• chr7-142307367-AGTGTGTGTGTGTGTGTGT-AGTGTGTGTGTGTGTGTGTGTGTGTGTGT

Variant summary

Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BS2

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.0026 (3 hom., cov: 0)
• Consequence: intergenic_region
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: 1.60

Genes affected

(HGNC:):

ACMG classification

Verdict is Likely_benign. Variant got -4 ACMG points.

• BS2: High Homozygotes in GnomAd4 at 3 gene

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	#exon/exons	MANE	Protein	UniProt
		n.142307367_142307368insGTGTGTGTGT		intergenic_region
TRB		n.142307391_142307400dupTGTGTGTGTG		intragenic_variant

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	#exon/exons	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.00264 AC: 386 AN: 146220 Hom.: 3 Cov.: 0

Gnomad AFR AF: 0.00574

Gnomad AMI AF: 0.00

Gnomad AMR AF: 0.00170

Gnomad ASJ AF: 0.0126

Gnomad EAS AF: 0.000407

Gnomad SAS AF: 0.00556

Gnomad FIN AF: 0.000209

Gnomad MID AF: 0.00325

Gnomad NFE AF: 0.000844

Gnomad OTH AF: 0.00252

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.00263 AC: 385 AN: 146326 Hom.: 3 Cov.: 0 AF XY: 0.00293 AC XY: 208 AN XY: 71052

Gnomad4 AFR AF: 0.00572

Gnomad4 AMR AF: 0.00170

Gnomad4 ASJ AF: 0.0126

Gnomad4 EAS AF: 0.000408

Gnomad4 SAS AF: 0.00535

Gnomad4 FIN AF: 0.000209

Gnomad4 NFE AF: 0.000844

Gnomad4 OTH AF: 0.00249

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs3222967; hg19: chr7-142007188;