7-143478683-G-A
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_176883.2(TAS2R41):c.811G>A(p.Ala271Thr) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000321 in 1,614,062 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_176883.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
TAS2R41 | NM_176883.2 | c.811G>A | p.Ala271Thr | missense_variant | 1/1 | ENST00000408916.1 | |
EPHA1-AS1 | NR_033897.1 | n.207-26091G>A | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
TAS2R41 | ENST00000408916.1 | c.811G>A | p.Ala271Thr | missense_variant | 1/1 | NM_176883.2 | P1 | ||
EPHA1-AS1 | ENST00000429289.5 | n.207-26091G>A | intron_variant, non_coding_transcript_variant | 1 | |||||
EPHA1-AS1 | ENST00000690912.1 | n.228-17283G>A | intron_variant, non_coding_transcript_variant | ||||||
EPHA1-AS1 | ENST00000703017.1 | n.206-17283G>A | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes AF: 0.000513 AC: 78AN: 152052Hom.: 0 Cov.: 31
GnomAD3 exomes AF: 0.000297 AC: 74AN: 249268Hom.: 0 AF XY: 0.000214 AC XY: 29AN XY: 135236
GnomAD4 exome AF: 0.000301 AC: 440AN: 1461892Hom.: 0 Cov.: 35 AF XY: 0.000283 AC XY: 206AN XY: 727246
GnomAD4 genome AF: 0.000513 AC: 78AN: 152170Hom.: 0 Cov.: 31 AF XY: 0.000605 AC XY: 45AN XY: 74392
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | May 15, 2024 | The c.811G>A (p.A271T) alteration is located in exon 1 (coding exon 1) of the TAS2R41 gene. This alteration results from a G to A substitution at nucleotide position 811, causing the alanine (A) at amino acid position 271 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at