7-550562-A-G
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6BP7BA1
The NM_001164760.2(PRKAR1B):āc.1014T>Cā(p.Thr338Thr) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.129 in 1,598,392 control chromosomes in the GnomAD database, including 14,221 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (no stars).
Frequency
Consequence
NM_001164760.2 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.148 AC: 22447AN: 151996Hom.: 1814 Cov.: 32
GnomAD3 exomes AF: 0.132 AC: 30002AN: 228116Hom.: 2226 AF XY: 0.126 AC XY: 15737AN XY: 124968
GnomAD4 exome AF: 0.127 AC: 183052AN: 1446278Hom.: 12408 Cov.: 32 AF XY: 0.124 AC XY: 89057AN XY: 718754
GnomAD4 genome AF: 0.148 AC: 22478AN: 152114Hom.: 1813 Cov.: 32 AF XY: 0.146 AC XY: 10889AN XY: 74350
ClinVar
Submissions by phenotype
not specified Benign:2
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PRKAR1B-related disorder Benign:1
This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at