7-66076320-C-G
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_000048.4(ASL):c.12+227C>G variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.595 in 152,050 control chromosomes in the GnomAD database, including 27,423 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_000048.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ASL | NM_000048.4 | c.12+227C>G | intron_variant | Intron 2 of 16 | ENST00000304874.14 | NP_000039.2 | ||
ASL | NM_001024943.2 | c.12+227C>G | intron_variant | Intron 1 of 15 | NP_001020114.1 | |||
ASL | NM_001024944.2 | c.12+227C>G | intron_variant | Intron 1 of 14 | NP_001020115.1 | |||
ASL | NM_001024946.2 | c.12+227C>G | intron_variant | Intron 1 of 14 | NP_001020117.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.595 AC: 90417AN: 151932Hom.: 27391 Cov.: 33
GnomAD4 genome AF: 0.595 AC: 90500AN: 152050Hom.: 27423 Cov.: 33 AF XY: 0.591 AC XY: 43921AN XY: 74328
ClinVar
Submissions by phenotype
not provided Benign:2
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This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at