8-97775926-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The ENST00000445593.6(LAPTM4B):c.190C>T(p.Gln64*) variant causes a stop gained change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000191 in 1,045,298 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Variant results in nonsense mediated mRNA decay.
Frequency
Consequence
ENST00000445593.6 stop_gained
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
LAPTM4B | ENST00000445593.6 | c.190C>T | p.Gln64* | stop_gained | Exon 1 of 7 | 1 | ENSP00000402301.2 | |||
LAPTM4B | ENST00000619747.1 | c.190C>T | p.Gln64* | stop_gained | Exon 1 of 7 | 1 | ENSP00000482533.1 | |||
LAPTM4B | ENST00000521545 | c.-84C>T | 5_prime_UTR_variant | Exon 1 of 7 | 1 | NM_018407.6 | ENSP00000428409.1 | |||
LAPTM4B | ENST00000517924 | c.-84C>T | 5_prime_UTR_variant | Exon 1 of 5 | 5 | ENSP00000429868.2 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD3 exomes AF: 0.0000184 AC: 1AN: 54450Hom.: 0 AF XY: 0.0000314 AC XY: 1AN XY: 31804
GnomAD4 exome AF: 0.00000191 AC: 2AN: 1045298Hom.: 0 Cov.: 33 AF XY: 0.00000387 AC XY: 2AN XY: 516306
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at