9-122662479-T-G
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_001005236.3(OR1L1):c.764T>G(p.Ile255Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000657 in 152,172 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001005236.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
OR1L1 | NM_001005236.3 | c.764T>G | p.Ile255Ser | missense_variant | Exon 1 of 1 | ENST00000309623.1 | NP_001005236.3 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
OR1L1 | ENST00000309623.1 | c.764T>G | p.Ile255Ser | missense_variant | Exon 1 of 1 | 6 | NM_001005236.3 | ENSP00000310773.1 | ||
OR1L1 | ENST00000373686.1 | c.914T>G | p.Ile305Ser | missense_variant | Exon 1 of 1 | 6 | ENSP00000362790.1 |
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152172Hom.: 0 Cov.: 32
GnomAD4 exome Cov.: 33
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152172Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 74332
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.764T>G (p.I255S) alteration is located in exon 1 (coding exon 1) of the OR1L1 gene. This alteration results from a T to G substitution at nucleotide position 764, causing the isoleucine (I) at amino acid position 255 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at