9-132499467-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001282957.2(CFAP77):āc.391G>Cā(p.Gly131Arg) variant causes a missense change. The variant allele was found at a frequency of 0.0000421 in 1,614,206 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. G131S) has been classified as Uncertain significance.
Frequency
Consequence
NM_001282957.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CFAP77 | NM_001282957.2 | c.391G>C | p.Gly131Arg | missense_variant | 3/6 | ENST00000393216.3 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CFAP77 | ENST00000393216.3 | c.391G>C | p.Gly131Arg | missense_variant | 3/6 | 1 | NM_001282957.2 | P1 | |
CFAP77 | ENST00000343036.6 | c.499G>C | p.Gly167Arg | missense_variant | 4/7 | 2 | |||
CFAP77 | ENST00000393215.7 | c.391G>C | p.Gly131Arg | missense_variant | 3/4 | 5 |
Frequencies
GnomAD3 genomes AF: 0.000125 AC: 19AN: 152206Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000191 AC: 48AN: 251428Hom.: 0 AF XY: 0.000206 AC XY: 28AN XY: 135904
GnomAD4 exome AF: 0.0000335 AC: 49AN: 1461882Hom.: 0 Cov.: 32 AF XY: 0.0000371 AC XY: 27AN XY: 727244
GnomAD4 genome AF: 0.000125 AC: 19AN: 152324Hom.: 0 Cov.: 32 AF XY: 0.0000940 AC XY: 7AN XY: 74482
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Apr 15, 2024 | The c.499G>C (p.G167R) alteration is located in exon 4 (coding exon 4) of the CFAP77 gene. This alteration results from a G to C substitution at nucleotide position 499, causing the glycine (G) at amino acid position 167 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at