9-34564707-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP3
The NM_147164.3(CNTFR):c.211G>A(p.Gly71Ser) variant causes a missense change. The variant allele was found at a frequency of 0.00000682 in 1,613,918 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_147164.3 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
CNTFR | ENST00000378980.8 | c.211G>A | p.Gly71Ser | missense_variant | Exon 4 of 10 | 1 | NM_147164.3 | ENSP00000368265.3 | ||
CNTFR | ENST00000351266.8 | c.211G>A | p.Gly71Ser | missense_variant | Exon 3 of 9 | 1 | ENSP00000242338.4 | |||
CNTFR | ENST00000610543.4 | c.211G>A | p.Gly71Ser | missense_variant | Exon 4 of 10 | 5 | ENSP00000480451.1 | |||
CNTFR | ENST00000417345.2 | c.211G>A | p.Gly71Ser | missense_variant | Exon 4 of 7 | 3 | ENSP00000388082.1 |
Frequencies
GnomAD3 genomes AF: 0.00000658 AC: 1AN: 152090Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000199 AC: 5AN: 250874Hom.: 0 AF XY: 0.0000295 AC XY: 4AN XY: 135670
GnomAD4 exome AF: 0.00000684 AC: 10AN: 1461828Hom.: 0 Cov.: 32 AF XY: 0.00000825 AC XY: 6AN XY: 727206
GnomAD4 genome AF: 0.00000658 AC: 1AN: 152090Hom.: 0 Cov.: 32 AF XY: 0.0000135 AC XY: 1AN XY: 74288
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.211G>A (p.G71S) alteration is located in exon 4 (coding exon 2) of the CNTFR gene. This alteration results from a G to A substitution at nucleotide position 211, causing the glycine (G) at amino acid position 71 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at