9-38395931-C-T
Variant summary
Our verdict is Benign. Variant got -21 ACMG points: 0P and 21B. BP4_StrongBP6_Very_StrongBP7BA1
The NM_000692.5(ALDH1B1):c.183C>T(p.Thr61Thr) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.153 in 1,613,694 control chromosomes in the GnomAD database, including 22,051 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_000692.5 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -21 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ALDH1B1 | NM_000692.5 | c.183C>T | p.Thr61Thr | synonymous_variant | Exon 2 of 2 | ENST00000377698.4 | NP_000683.3 | |
ALDH1B1 | XM_011517802.3 | c.324C>T | p.Thr108Thr | synonymous_variant | Exon 2 of 2 | XP_011516104.2 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ALDH1B1 | ENST00000377698.4 | c.183C>T | p.Thr61Thr | synonymous_variant | Exon 2 of 2 | 1 | NM_000692.5 | ENSP00000366927.3 | ||
ALDH1B1 | ENST00000635162.1 | c.183C>T | p.Thr61Thr | synonymous_variant | Exon 3 of 3 | 3 | ENSP00000489053.1 |
Frequencies
GnomAD3 genomes AF: 0.181 AC: 27559AN: 152096Hom.: 2865 Cov.: 32
GnomAD3 exomes AF: 0.198 AC: 49618AN: 250902Hom.: 5995 AF XY: 0.192 AC XY: 26061AN XY: 135674
GnomAD4 exome AF: 0.150 AC: 219451AN: 1461480Hom.: 19177 Cov.: 32 AF XY: 0.152 AC XY: 110671AN XY: 727068
GnomAD4 genome AF: 0.181 AC: 27596AN: 152214Hom.: 2874 Cov.: 32 AF XY: 0.186 AC XY: 13816AN XY: 74410
ClinVar
Submissions by phenotype
not specified Benign:1
This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease. -
not provided Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at