ENST00000398622.3:n.-17+4050T>C

Variant summary

Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.

The ENST00000398622.3(C2orf74):​n.-17+3968C>. variant causes a intron change. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

GnomAD MNV: 𝑓 N/A
Genomes: 𝑓 N/A ( N/A hom., cov: )
Exomes 𝑓: N/A ( N/A hom. )

Consequence

C2orf74
ENST00000398622.3 intron

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

No conservation score assigned

Publications

No publications found
Variant links:
Genes affected
C2orf74 (HGNC:34439): (chromosome 2 open reading frame 74) Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
C2orf74-AS1 (HGNC:56377): (C2orf74 antisense RNA 1)

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ACMG classification

Classification was made for transcript

Our verdict: Uncertain_significance. The variant received 0 ACMG points.

Variant Effect in Transcripts

ACMG analysis was done for transcript: ENST00000398622.3. You can select a different transcript below to see updated ACMG assignments.

RefSeq Transcripts

Sel.
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt
C2orf74
NM_001143960.3
c.-122+3968C>.
intron
N/ANP_001137432.1C9JBF1
C2orf74
NM_001316317.2
c.-8+3968C>.
intron
N/ANP_001303246.1C9JBF1
C2orf74
NM_001367069.1
c.-273+3968C>.
intron
N/ANP_001353998.1C9JBF1

Ensembl Transcripts

Sel.
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt
C2orf74
ENST00000398622.3
TSL:1
n.-17+3968C>.
intron
N/AENSP00000381621.2F8VY72
C2orf74
ENST00000426997.5
TSL:3
c.-122+3968C>.
intron
N/AENSP00000398725.1C9JBF1
C2orf74
ENST00000464909.2
TSL:2
c.-8+3968C>.
intron
N/AENSP00000482798.1C9JBF1

Frequencies

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
We have no GnomAD4 genomes data on this position. Probably position not covered by the project.

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.9

Name
Calibrated prediction
Score
Prediction

Splicing

Name
Calibrated prediction
Score
Prediction

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

Other links and lift over

hg19: chr2-61376299; API
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