ENST00000541189.5:c.435+15979G>C
Variant names:
Variant summary
Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.
The ENST00000541189.5(MSRB3):c.435+15978C>. variant causes a intron change. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
GnomAD MNV: 𝑓 N/A
Genomes: 𝑓 N/A ( N/A hom., cov: )
Exomes 𝑓: N/A ( N/A hom. )
Consequence
MSRB3
ENST00000541189.5 intron
ENST00000541189.5 intron
Scores
Not classified
Clinical Significance
Not reported in ClinVar
Conservation
No conservation score assigned
Publications
No publications found
Genes affected
MSRB3 (HGNC:27375): (methionine sulfoxide reductase B3) The protein encoded by this gene catalyzes the reduction of methionine sulfoxide to methionine. This enzyme acts as a monomer and requires zinc as a cofactor. Several transcript variants encoding two different isoforms have been found for this gene. One of the isoforms localizes to mitochondria while the other localizes to endoplasmic reticula. [provided by RefSeq, Jul 2010]
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ACMG classification
Classification was made for transcript
Our verdict: Uncertain_significance. The variant received 0 ACMG points.
Transcripts
RefSeq
| Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
|---|---|---|---|---|---|---|---|---|
| MSRB3-AS1 | NR_120431.1 | n.550-2669G>. | intron_variant | Intron 3 of 3 |
Ensembl
| Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
|---|---|---|---|---|---|---|---|---|---|---|
| MSRB3 | ENST00000541189.5 | c.435+15978C>. | intron_variant | Intron 5 of 5 | 3 | ENSP00000440722.1 | ||||
| MSRB3 | ENST00000446731.2 | c.264+15978C>. | intron_variant | Intron 4 of 4 | 3 | ENSP00000404903.2 | ||||
| MSRB3 | ENST00000647481.1 | c.195+15978C>. | intron_variant | Intron 3 of 4 | ENSP00000496162.1 | |||||
| MSRB3-AS1 | ENST00000537250.5 | n.376-2669G>. | intron_variant | Intron 3 of 3 | 3 |
Frequencies
We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
We have no GnomAD4 genomes data on this position. Probably position not covered by the project.
ClinVar
Not reported inComputational scores
Source:
Name
Calibrated prediction
Score
Prediction
Splicing
Name
Calibrated prediction
Score
Prediction
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
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