ENST00000552844.5:n.-33+18908A>G

Variant names:

• chr1-94256193-C-.
• ENST00000552844.5:n.-33+18819G>.

Variant summary

Our verdict is Uncertain significance. Variant got 0 ACMG points: 0P and 0B.

The ENST00000552844.5(ARHGAP29):​n.-33+18819G>. variant causes a intron change. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency:
  • Genomes: 𝑓 N/A (N/A hom., cov:)
  • Exomes 𝑓: N/A (N/A hom.)
• Consequence: ARHGAP29 ENST00000552844.5 intron
• Clinical Significance: Not reported in ClinVar
• Conservation: No conservation score assigned

Genes affected

ARHGAP29 (HGNC:30207): (Rho GTPase activating protein 29) Rap1 is a small GTPase that, through effectors, regulates Rho GTPase signaling. These effectors- Rasip1, Radil, and the protein encoded by this gene- translocate to the cell membrane, where they form a multiprotein complex. This complex is necessary for Rap1-induced inhibition of Rho signaling. Defects in this gene may be a cause of nonsyndromic cleft lip with or without cleft palate. [provided by RefSeq, Jun 2016]

ARHGAP29-AS1 (HGNC:54311): (ARHGAP29 antisense RNA 1)

ACMG classification

Verdict is Uncertain_significance. Variant got 0 ACMG points.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt
ARHGAP29	XM_011542439.3	c.-33+18819G>.		intron_variant	Intron 1 of 22		XP_011540741.1
ARHGAP29	XM_047434754.1	c.-33+24131G>.		intron_variant	Intron 3 of 24		XP_047290710.1
ARHGAP29	XM_047434759.1	c.-33+24131G>.		intron_variant	Intron 2 of 23		XP_047290715.1

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt
ARHGAP29	ENST00000552844.5	n.-33+18819G>.		intron_variant	Intron 1 of 25	1		ENSP00000449764.1
ARHGAP29-AS1	ENST00000413103.3	n.449+5649C>.		intron_variant	Intron 3 of 4	5
ARHGAP29-AS1	ENST00000418242.3	n.421+6674C>.		intron_variant	Intron 2 of 3	5

Frequencies

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

We have no GnomAD4 genomes data on this position. Probably position not covered by the project.

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

No publications associated with this variant yet.

Other links and lift over

hg19: chr1-94721749;