ENST00000588891.1:n.192-154G>A

Variant summary

Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.

The ENST00000588891.1(ENSG00000267314):​n.-13A>. variant causes a non coding transcript exon change. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

GnomAD MNV: 𝑓 N/A
Genomes: 𝑓 N/A ( N/A hom., cov: )
Exomes 𝑓: N/A ( N/A hom. )

Consequence

ENSG00000267314
ENST00000588891.1 non_coding_transcript_exon

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

No conservation score assigned

Publications

No publications found
Variant links:
Genes affected
VMAC (HGNC:33803): (vimentin type intermediate filament associated coiled-coil protein) Predicted to be located in cytoplasm. Predicted to be active in type III intermediate filament. [provided by Alliance of Genome Resources, Apr 2022]

Genome browser will be placed here

ACMG classification

Classification was made for transcript

Our verdict: Uncertain_significance. The variant received 0 ACMG points.

Transcripts

RefSeq

Gene Transcript HGVSc HGVSp Effect Exon rank MANE Protein UniProt
VMACNM_001017921.4 linkc.-13A>. 5_prime_UTR_variant Exon 1 of 2 ENST00000339485.4 NP_001017921.1 Q2NL98

Ensembl

Gene Transcript HGVSc HGVSp Effect Exon rank TSL MANE Protein Appris UniProt
ENSG00000267314ENST00000588891.1 linkn.-13A>. non_coding_transcript_exon_variant Exon 1 of 4 4 ENSP00000468419.1 K7ERU9
VMACENST00000339485.4 linkc.-13A>. 5_prime_UTR_variant Exon 1 of 2 1 NM_001017921.4 ENSP00000343348.2 Q2NL98
ENSG00000267314ENST00000588891.1 linkn.-13A>. 5_prime_UTR_variant Exon 1 of 4 4 ENSP00000468419.1 K7ERU9

Frequencies

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
We have no GnomAD4 genomes data on this position. Probably position not covered by the project.

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name
Calibrated prediction
Score
Prediction

Splicing

Name
Calibrated prediction
Score
Prediction

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

Other links and lift over

hg19: chr19-5904889; API