X-102715195-G-A
Variant summary
Our verdict is Benign. Variant got -9 ACMG points: 0P and 9B. BP4_StrongBP6BS2
The NM_001004051.4(GPRASP2):c.326G>A(p.Arg109His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00214 in 1,211,722 control chromosomes in the GnomAD database, including 3 homozygotes. There are 806 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (no stars).
Frequency
Consequence
NM_001004051.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -9 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000934 AC: 106AN: 113465Hom.: 0 Cov.: 24 AF XY: 0.000731 AC XY: 26AN XY: 35591
GnomAD3 exomes AF: 0.000755 AC: 138AN: 182759Hom.: 0 AF XY: 0.000683 AC XY: 46AN XY: 67397
GnomAD4 exome AF: 0.00226 AC: 2482AN: 1098204Hom.: 3 Cov.: 31 AF XY: 0.00215 AC XY: 780AN XY: 363566
GnomAD4 genome AF: 0.000934 AC: 106AN: 113518Hom.: 0 Cov.: 24 AF XY: 0.000729 AC XY: 26AN XY: 35654
ClinVar
Submissions by phenotype
GPRASP2-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at