X-3006595-G-A
Variant summary
Our verdict is Benign. Variant got -9 ACMG points: 0P and 9B. BP4_StrongBP6BS2
The NM_001011719.2(ARSH):c.-18G>A variant causes a 5 prime UTR change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000634 in 1,193,877 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 223 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (no stars).
Frequency
Consequence
NM_001011719.2 5_prime_UTR
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -9 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000242 AC: 27AN: 111666Hom.: 0 Cov.: 23 AF XY: 0.000148 AC XY: 5AN XY: 33872
GnomAD3 exomes AF: 0.000189 AC: 34AN: 180348Hom.: 0 AF XY: 0.000170 AC XY: 11AN XY: 64880
GnomAD4 exome AF: 0.000675 AC: 730AN: 1082160Hom.: 0 Cov.: 27 AF XY: 0.000625 AC XY: 218AN XY: 348996
GnomAD4 genome AF: 0.000242 AC: 27AN: 111717Hom.: 0 Cov.: 23 AF XY: 0.000147 AC XY: 5AN XY: 33933
ClinVar
Submissions by phenotype
ARSH-related condition Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at