X-3015014-T-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 4P and 4B. PP3_StrongBS2
The NM_001011719.2(ARSH):āc.385T>Cā(p.Cys129Arg) variant causes a missense change. The variant allele was found at a frequency of 0.0000364 in 1,209,907 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 17 hemizygotes in GnomAD. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001011719.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000188 AC: 21AN: 111787Hom.: 0 Cov.: 22 AF XY: 0.000177 AC XY: 6AN XY: 33951
GnomAD3 exomes AF: 0.0000492 AC: 9AN: 182950Hom.: 0 AF XY: 0.0000297 AC XY: 2AN XY: 67430
GnomAD4 exome AF: 0.0000209 AC: 23AN: 1098120Hom.: 0 Cov.: 31 AF XY: 0.0000303 AC XY: 11AN XY: 363474
GnomAD4 genome AF: 0.000188 AC: 21AN: 111787Hom.: 0 Cov.: 22 AF XY: 0.000177 AC XY: 6AN XY: 33951
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.385T>C (p.C129R) alteration is located in exon 4 (coding exon 4) of the ARSH gene. This alteration results from a T to C substitution at nucleotide position 385, causing the cysteine (C) at amino acid position 129 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at